Bioinfomatics Analysis Services

The Genome Computing Centre (GCC) provides computing support for bioinformatics analyses – genome and transcriptome sequence analyses, microarray, proteomics and integration. It also hosts the National Biotechnology and Bioinformatics Network (NBBnet), which is a network of resources and infrastructure, aimed at providing bioinformatics and biotechnology information capability and capacity to the Malaysia biological research community.

Specialist Services

•  Genome assembly
Transcriptome and differential expression analysis
Genome annotation
Phylogenetics
SNP calling
Miscellaneous sequence analyses

Key Instrumentation

Genome and Structural Informatics

SGI UV 2000
SGI Altix 4700 Super Cluster
SGI XE 1200 Cluster
SGI Infinite Storage 5500
EMC2Isilon

Software

Tuxedo Suite
Velvet/Oases
Trinity
CLC Genomics Workbench
SSPACE and GapFiller
Prodigal
BLAST2GO
Discovery Studio
Modeller
I-TASSER
YASARA
GATK
SAMtools
PHYLIP
MrBayes
KmerGenie
JELLYFISH
QIIME

 

Genome Assembly and Annotation

 

De novo and reference assemblies for prokaryotes to higher eukaryotes. Gene annotation and comparative genome analyses optional.

Structural Modeling
 

Homology modeling, fold recognition, ab initio


Variant Analysis
 

Variant calling, variant filtering, functional annotation of mutations.


 

Transcriptome and Differential Expression Analysis

 

De novo and reference transcriptome analyses, differential expression analysis


Phylogenetics
 

Homology search, multiple sequence alignment, functional divergence study and phylogenomics


Misc. Sequence Analyses

 

Sanger Sequencing analysis, high-throughput BLAST, NCBI submission and sequence clustering

 
 

Service Process 

     Confidentiality and Security

Strict confidentiality and security is guaranteed with every project we complete. MGI will not claim ownership of all related intellectual property. Data will be destroyed  within 30 days after completion, unless requested otherwise by customer.  

We strive to deliver first class products together with professional, fast and competent customer support whenever you need it. Feel free to contact us via email or phone to have our team to assist you.

 

 



For further information please contact:

 

1. Mohd Faizal Abu Bakar - PIC (Scientist)
2. Mohd Noor Mat Isa (Scientist)


Malaysia Genome Institute (MGI)
National Institute of Biotechnology Malaysia (NIBM)
Jalan Bangi,
43000 Kajang,
Selangor Darul Ehsan, MALAYSIA

You may also email us at:

    This email address is being protected from spambots. You need JavaScript enabled to view it.  |  This email address is being protected from spambots. You need JavaScript enabled to view it.  
   +6 03 8926 7446 ext. 1328  |   Fax : +6 03 8926 7972